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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 400aa MW: 45949.4 Da PI: 7.4709 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126 | 4.1e-39 | 127 | 281 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.....eaesssssa 82 kkdrhski T++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl+qa ++ik+l + s+ss sec + CCG028420.1 127 SKKDRHSKINTAQGPRDRRMRLSLKVAREFFDLQDKLRFDKASKTVEWLLTQARTEIKKLSSGfpvmnyscsvgtkSASSTSECevlseI-----HID 219 69*************************************************************999999999977655555667444331.....333 PP TCP 83 snsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 s+ + + k+++ + ++s+ +a + +akesr++ar+rarert+ek r +++ CCG028420.1 220 STLKVRsvskgksslcvKKERRTSRASSSR--KAPLNPFAKESRERARERARERTKEKLRSRSR 281 322221444455556554444443333333..444489999*****************998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.3E-42 | 127 | 277 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.281 | 128 | 186 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.733 | 258 | 275 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MFPLSNNGND PMSYNDQQAY SMPFFSDIIS NSKQYVPPPL SFCHLPSPFF AYDQLELEDH 60 SIFLQQNYDL LLHQQPLRTA ATSTTPSQST VVNNMVDYNK NDVIEITEIC NKQSNSSNDQ 120 IPRKRSSKKD RHSKINTAQG PRDRRMRLSL KVAREFFDLQ DKLRFDKASK TVEWLLTQAR 180 TEIKKLSSGF PVMNYSCSVG TKSASSTSEC EVLSEIHIDS TLKVRSVSKG KSSLCVKKER 240 RTSRASSSRK APLNPFAKES RERARERARE RTKEKLRSRS RSLNESKLCE LEAVNDEFNQ 300 FAGCWSPFET DDQESGTRNI NPSLEVQMAE AEVPFYQEQE QLDTREGMID ETLANMGKWS 360 PSLPTHLHKN GIPQENQFTD FQYPLYKTWD HEAYNIDGMC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 260 | 272 | RERARERARERTK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010148.1 | 0.0 | PREDICTED: transcription factor TCP12-like | ||||
TrEMBL | B9IDZ9 | 0.0 | B9IDZ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s03140.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-20 | TCP domain protein 12 |